According to Worth jalapenos are fairly easy to overwinter. If the lack of sun is an issue perhaps you can overwinter outside. I don't know how harsh the winters are where you are but you can cut the plant back and then mulch around the container. If you need additional protection then you can create a greenhouse effect by either putting the plant in its container in a larger clear plastic container surrounded by mulch. Depending on how big the roots are you can even put the plant in a clear/opaque bottle or jug and let that be the greenhouse.
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