Are these seeds saved by you from an indeterminate? In that case it's hard to explain. This is how determinates like roma grow for example. Not all follow the same patters. It's really important for determinates to let that big sucker under the first flower cluster live. In fact, that's how determinates are usually pruned: everything until that sucker, and then let the plant do whatever. This way you get the air circulation at the base but still have plenty enough branches that will form on top.
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