How deep is too deep
I do virtually the same thing (including removing leafs to reveal more stem to bury) just on a smaller version (seed tray, small cup, 1 gal pot) as my seedlings progress before plant out. I use the extra re potting to apply mycorrhizae each time which also helps root growth. I don’t see any problem with what you’re doing.
I wouldn’t go bury the first cluster of fruits, but besides that I say plant them deep. I have, and have had no issues.
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